DICTY Archives

February 2011, Week 1

DICTY@LISTSERV.IT.NORTHWESTERN.EDU

Options: Use Monospaced Font
Show Text Part by Default
Show All Mail Headers

Message: [<< First] [< Prev] [Next >] [Last >>]
Topic: [<< First] [< Prev] [Next >] [Last >>]
Author: [<< First] [< Prev] [Next >] [Last >>]

Print Reply
Subject:
From:
dictyBase <[log in to unmask]>
Reply To:
Date:
Fri, 4 Feb 2011 16:19:20 -0600
Content-Type:
text/plain
Parts/Attachments:
text/plain (245 lines)
dictyNews
Electronic Edition
Volume 36, number 4
Feb 4, 2011

Please submit abstracts of your papers as soon as they have been
accepted for publication by sending them to [log in to unmask]
or by using the form at
http://dictybase.org/db/cgi-bin/dictyBase/abstract_submit.

Back issues of dictyNews, the Dicty Reference database and other
useful information is available at dictyBase - http://dictybase.org.

Follow dictyBase on twitter:
http://twitter.com/dictybase


=========
Abstracts
=========


A simple mechanism for complex social behaviour

Katie Parkinson1*, Neil J. Buttery1*, Jason B. Wolf2† and 
Christopher R.L. Thompson1†

1 Faculty of Life Sciences, Michael Smith Building, University of Manchester, 
Oxford Rd, Manchester, M13 9PT, UK

2 Department of Biology and Biochemistry, University of Bath, 
Claverton Down, Bath, BA2 7AY, UK

† Corresponding authors
* These authors contributed equally to this work


PLoS Biology, in press

The evolution of cooperation is a paradox because natural selection should 
favour exploitative individuals that avoid paying their fair share of any costs. 
Such conflict between the self-interests of cooperating individuals often 
results in the evolution of complex, opponent specific, social strategies 
and counter strategies. However, the genetic and biological mechanisms 
underlying complex social strategies, and therefore the evolution of 
cooperative behaviour, are largely unknown.  To address this dearth of 
empirical data, we combine mathematical modeling, molecular genetic 
and developmental approaches to test whether variation in the production 
of and response to social signals is sufficient to generate the complex 
partner specific social success seen in the social amoeba Dictyostelium 
discoideum. Firstly, we find that the simple model of production of and 
response to social signals can generate the sort of apparent complex 
changes in social behaviour seen in this system, without the need for 
partner recognition.  Secondly, measurements of signal production and 
response in a mutant with a change in a single gene that leads to a shift 
in social behaviour provide support for this model.  Finally, these simple 
measurements of social signalling can also explain complex patterns of 
variation in social behaviour generated by the natural genetic diversity 
found in isolates collected from the wild. Our studies therefore demonstrate 
a novel and elegantly simple underlying mechanistic basis for natural 
variation in complex social strategies in D. discoideum.  More generally, 
they suggest that simple rules governing interactions between individuals 
can be sufficient to generate a diverse array of outcomes that appear 
complex and unpredictable when those rules are unknown.  


Submitted by Chris Thompson [[log in to unmask]]
--------------------------------------------------------------------------------


Cell type specific filamin complex regulation by a novel class of HECT 
ubiquitin ligase is required for normal cell motility and patterning

Simone L. Blagg1, Suzanne Battom1, Sarah J. Annesley2, Thomas Keller1, 
Katie Parkinson1, Mei-FangWu1, Paul R. Fisher2 and 
Christopher R. L. Thompson1*

1 Faculty of Life Sciences, Michael Smith Building, University of Manchester,
Oxford Road, Manchester M13 9PT, UK

2 Department of Microbiology, La Trobe University, VIC 3086, Australia

* Corresponding Author 


Development, in press

Differential cell motility plays a key role in many developmental processes.  
This is perhaps most evident in examples of pattern formation in which the 
different cell types arise intermingled before sorting out into discrete tissues.  
In this, heterogeneities in responsiveness to differentiation inducing signals 
are thought to result in the activation of cell type specific genes and ‘salt and 
pepper’ patterning.  However, how differential gene expression results in cell 
sorting is poorly defined.  Here we describe a novel gene (hfnA) that provides 
the first mechanistic link between cell signalling, differential gene expression 
and cell type specific sorting in Dictyostelium. HfnA defines a novel group of 
evolutionarily conserved HECT ubiquitin ligases with a Filamin domain 
towards the N-terminus (HFNs). HfnA expression is induced by the stalk 
differentiation inducing factor DIF-1 and is restricted to a subset of prestalk 
cells (pstO). In a HfnA- mutant, pstO cells differentiate but their sorting out is 
delayed. Genetic interactions suggest this is due to misregulation of filamin
complex activity. Over-expression of filamin complex members phenocopies
the HfnA- pstO cell sorting defect, whereas disruption of filamin complex
function in a wild type background results in pstO cells sorting more strongly.  
Furthermore, filamin disruption in an HfnA- background effectively rescues 
pstO cell localization. Finally HfnA- cells also exhibit altered slug phototaxis 
phenotypes that are consistent with filamin complex hyperactivity.  We
therefore propose that HfnA regulates filamin complex activity and cell type 
specific motility, through the breakdown of filamin complexes.  These 
findings provide a novel mechanism for filamin regulation, and demonstrate 
that filamin is a crucial mechanistic link between responses to differentiation 
signals and cell movement in patterning based on ‘salt and pepper’ 
differentiation and sorting out.


Submitted by Chris Thompson [[log in to unmask]]
--------------------------------------------------------------------------------

Non-genetic heterogeneity and cell fate choice in D. discoideum 

Alex Chattwood and Christopher R.L. Thompson*

Faculty of Life Sciences, University of Manchester, Michael Smith Building, 
Oxford Rd, Manchester, M13 9PT

*Corresponding author


Development, Growth and Differentiation, in press

From microbes to metazoans, it is now clear that fluctuations in the 
abundance of mRNA transcripts and protein molecules enable genetically 
identical cells to oscillate between several distinct states (Kaern et al., 2005). 
Since this cell-cell variability does not derive from physical differences in 
the genetic code it is termed non-genetic heterogeneity.  Non-genetic 
heterogeneity endows cell populations with useful capabilities they could 
never achieve if each cell were the same as its neighbours (Eldar and 
Elowitz, 2010; Raj and van Oudenaarden, 2008).  One such example is 
seen during multicellular development and ‘salt and pepper’ cell type 
differentiation. In this review, we will firstly examine the importance of 
non-genetic heterogeneity in initiating ‘salt and pepper’ pattern formation 
during Dictyostelium discoideum development.  Secondly, we will discuss 
the various ways in which non-genetic heterogeneity might be generated, 
as well as recent advances in understanding the molecular basis of 
heterogeneity in this system. 


Submitted by Chris Thompson [[log in to unmask]]
--------------------------------------------------------------------------------


Nucleolar localization and identification of nuclear/nucleolar localization 
signals of the calmodulin-binding protein nucleomorphin during growth 
and mitosis in Dictyostelium

Andrew Catalano (1) and Danton H. O’Day (2)

(1) Department of Cell & Systems Biology, 25 Harbord Street, University 
of Toronto, Toronto, ON, Canada  M5S 3G5
(2) Department of Biology, University of Toronto at Mississauga, 3359 
Mississauga Road , Mississauga, ON, Canada   L5L 1C6


Histochemistry and Cell Biology in press

The calmodulin-binding protein nucleomorphin isoform NumA1 is a nuclear 
number regulator in Dictyostelium that localizes to intra-nuclear patches 
adjacent to the nuclear envelope and to a lesser extent the nucleoplasm. 
Earlier studies have shown similar patches to be nucleoli but only three 
nucleolar proteins have been identified in Dictyostelium. Here, actinomycin-D 
treatment caused the loss of NumA1 localization while calcium and calmodulin 
antagonists had no effect. In keeping with a nucleolar function, NumA1 moved 
out of the presumptive nucleoli during mitosis redistributing to areas within the 
nucleus, the spindle fibers, and centrosomal region before re-accumulating in 
the presumptive nucleoli at telophase. Together these data verify NumA1 as 
a true nucleolar protein. Prior to this study the dynamics of specific nucleolar 
proteins had not been determined during mitosis in Dictyostelium. FITC-
conjugated peptides equivalent to presumptive nuclear localization signals 
within NumA1 localized to nucleoli indicating that they also act as nucleolar 
localization signals. To our knowledge these represent the firstprecisely-defined 
nucleolar localization signals as well as the first nuclear/nucleolar localization 
signals identified in Dictyostelium. Together, these results reveal that NumA1 
is a true nucleolar protein and the only nucleolar calmodulin-binding protein 
identified in Dictyostelium. Possible use of nuclear/nucleolar localization 
signal-mediated drug targeting to nucleoli is discussed.


Submitted by Danton H. O’Day [[log in to unmask]]
--------------------------------------------------------------------------------


Efficient generation of gene knockout plasmids for Dictyostelium discoideum 
using one-step cloning

Stephan Wiegand, Janis Kruse, Sina Gronemann & Christian Hammann

Genomics, in press

The amoeba Dictyostelium discoideum is a well-established model organism 
for studying numerous aspects of cellular and developmental functions. Its 
rather small (~34 Mb) chromosomal genome and the high efficiency of gene
disruption by homologous recombination have enabled researchers to dissect 
various specific gene functions. We describe here the use of one-step cloning 
for the fast and efficient generation of deletion vectors that are produced in a 
one-step reaction by inserting two PCR products into an organism-specific, 
generic acceptor system. This worked efficiently for all 16 tested constructs 
directed against genes in the amoeba Dictyostelium discoideum. Saving cost 
and time, the used protocol represents a significant advancement in the 
generation of such plasmids compared to the conventionally applied restriction 
enzyme/ligation approach. Using appropriate selection markers, similar systems 
could also be useful in other organisms, where genes can be knocked out by 
homologous recombination. 


Submitted by Christian Hammann [[log in to unmask]]
--------------------------------------------------------------------------------


Actin Switches in Phagocytosis

Günther Gerisch

Max-Planck-Institut für Biochemie, 82152 Martinsried, Germany


Communicative & Integrative Biology, in press

Exposure of phagocytes to non-spherical particles has provided evidence 
for multiple actions of the actin system in force generation. For the uptake 
of long cylindrical particles, a “motile actin clamp” mechanism is proposed. 
When a phagocyte is engaged with an hourglass-shaped particle, it exerts 
contractile activity alternatively at the far end of the particle or at its concave 
region.  Phagocytes can switch within seconds between these different 
strategies of taking up a particle. This response switching is based on 
reprogramming the pattern of actin polymerization and depolymerization. 
The choice between different strategies of interaction with a particle 
increases the probability of engulfing the entire particle or at least a portion 
of it. Finally, a switch to actin disassembly enables a phagocyte to release 
a particle that turns out to be too big to be enclosed. 


Submitted by: Günther Gerisch [log in to unmask]]
==============================================================
[End dictyNews, volume 36, number 4]

ATOM RSS1 RSS2